Genomic Sequencing and Analysis of Parvovirus Isolated from Dogsin some Northern Provinces of Vietnam

Received: 14-09-2021

Accepted: 05-04-2022

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Issue: Vol. 20 No. 5 (2022)

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CHĂN NUÔI – THÚ Y – THỦY SẢN

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Hai, V., Ngoc, T., Hung, P., Tam, N., Dang, V., Dao, B., & Phan, L. (2024). Genomic Sequencing and Analysis of Parvovirus Isolated from Dogsin some Northern Provinces of Vietnam. Vietnam Journal of Agricultural Sciences, 20(5), 614–625. http://testtapchi.vnua.edu.vn/index.php/vjasvn/article/view/990

Genomic Sequencing and Analysis of Parvovirus Isolated from Dogsin some Northern Provinces of Vietnam

Vo Van Hai (*) 1 , Trinh Thi Bich Ngoc 1 , Pham Quang Hung 1 , Nguyen Van Tam 1 , Vu Xuan Dang 1 , Bui Tran Anh Dao 1 , Le Van Phan 1

  • 1 Khoa Thú y, Học viện Nông nghiệp Việt Nam

    • Keywords

    Dogs, Canine parvovirus type 2, Genomic sequencing, CPV-2c

    Abstract


    Canine Parvovirus type 2 (CPV-2) is a virus that causes acute diarrheal enteritis in dogs. CPV-2 is a DNA virus and based on the VP2 gene sequence, CPV-2 is clasified into CPV-2a, CPV-2b and CPV-2c. Currently, CPV-2c is the most popular variant circulating in the world as well as in Vietnam. In this study, the genome sequences of eight canine Parvovirus strains isolated in some northern provinces of Vietnam during 2018-2020 were sequenced. The results of genome sequencing of the Parvovirus strains have obtained genetic sequences of 4269 nucleotides (nt) in length, in which the gene sequence coding for the open reading frame (ORF) corresponding to the non-structural proteins was 2007 nt and structural proteins was 2256 nt in length. The phylogenetic analysis based on the full genome sequences showed that all eight present canine Parvovirus strains belonged to CPV-2c and shared the same evolutionary brand with clade Asia-4. The whole genomic sequence data of canine Parvovirus obtained in this study will be an important source for any spatial and temporal genetic evolution studies of canine Parvovirus strains circulating in Vietnam.

    References

    Appel M., Cooper B., Greisen H., Scott F. & Carmichael L. (1979). Canine viral enteritis. I. Status report on corona-and parvo-like viral enteritides. The Cornell veterinarian. 69(3): 123-133.

    Buonavoglia C., Martella V., Pratelli A., Tempesta M., Cavalli A., Buonavoglia D., Bozzo G., Elia G., Decaro1 N. &Carmichael L. (2001). Evidence for evolution of canine parvovirus type 2 in Italy. Journal of General Virology. 82(12): 3021-3025.

    Charoenkul K., Tangwangvivat R., Janetanakit T., Boonyapisitsopa S., Bunpapong N., Chaiyawong S. & Amonsin, A. (2019). Emergence of canine parvovirus type 2c in domestic dogs and cats from Thailand. Transboundary and emerging diseases. 66(4): 1518-1528.

    Chiang S.Y., Wu H.Y., Chiou M.T., Chang M.C. & Lin C.N. (2016). Identification of a novel canine parvovirus type 2c in Taiwan. Virology journal. 13(1): 1-7.

    Doan H.T.T., Le X.T.K., Do R.T., Nguyen K.T. & Le T.H. (2021). Canine parvovirus type 2c in Vietnam continues to produce distinct descendants with new mutations restricted to Vietnamese variants. Archives of Virology. pp. 1-9.

    Geng Y., Guo D., Li C., Wang E., Wei S., Wang Z., Yao S., Zhao X., Su M., Wang X., Wang J., Wu R., Feng L.& Sun D.(2015). Co-Circulation of the Rare CPV-2c with Unique Gln370Arg Substitution, New CPV-2b with Unique Thr440Ala Substitution, and New CPV-2a with High Prevalence and Variation in Heilongjiang Province, Northeast China. PLoS One. 10(9): e0137288.

    Guo L., Yang S.l., Wang C.d., Hou R., Chen S.j., Yang, X.n., Zhang M.l. (2013). Phylogenetic analysis of the haemagglutinin gene of canine distemper virus strains detected from giant panda and raccoon dogs in China. Virology journal. 10(1): 1-7.

    Hayes M., Russel R., Mueller R. & Lewis R. (1979). Myocarditis in young dogs associated with a parvovirus-like agent. The Canadian Veterinary Journal. 20(5): 126.

    Hoang M., Lin W.H., Nga B.T.T., Chiou M.T. & Lin C.N. (2019). Molecular epidemiology of canine parvovirus type 2 in Vietnam from November 2016 to February 2018. Virology journal. 16(1): 1-11.

    Kang B.K., Song D.S., Lee C.S., Jung K.I., Park S.J., Kim E.M. & Park B.K. (2008). Prevalence and genetic characterization of canine parvoviruses in Korea. Virus genes. 36(1): 127-133.

    Kumar S., Stecher G., Li M., Knyaz C. & Tamura K. (2018). MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular biology and evolution. 35(6): 1547.

    Lin Y.C., Chiang S.Y., Wu H.Y., Lin J.H., Chiou M.T., Liu H.F. & Lin C.N. (2017). Phylodynamic and genetic diversity of canine parvovirus type 2c in Taiwan. International journal of molecular sciences. 18(12): 2703.

    Mira F., Dowgier G., Purpari G., Vicari D., Di Bella S., Macaluso G., Gucciardi F.,Randazzo V., Decaro N. &Guercio A. (2018a). Molecular typing of a novel canine parvovirus type 2a mutant circulating in Italy. Infection, Genetics and Evolution. 61: 67-73.

    Mira F., Purpari G., Lorusso E., Di Bella S., Gucciardi F., Desario C., Macaluso G., Decaro N. & Guercio A. (2018b). Introduction of Asian canine parvovirus in Europe through dog importation. Transboundary and emerging diseases. 65(1): 16-21.

    Moon B.Y., Jang J., Kim S.H., Kim Y.H., Lee H.K., So B., Park C.K & Lee K.K. (2020). Genetic characterization of canine parvovirus type 2c from domestic dogs in Korea. Transboundary and emerging diseases. 67(4): 1645-1653.

    Nakamura M., Tohya Y., Miyazawa T., Mochizuki M., Phung H.T.T, Nguyen N.H. Huynh L.M.T., Nguyen L.T., Nguyen P.N., Nguyen P.V.,Nguyen N.P.T., Akashi H. (2004). A novel antigenic variant of Canine parvovirus from a Vietnamese dog. Archives of Virology. 149(11): 2261-2269.

    Nguyen Manh T., Piewbang C., Rungsipipat A. & Techangamsuwan S. (2021). Molecular and phylogenetic analysis of Vietnamese canine parvovirus 2C originated from dogs reveals a new Asia‐IV clade. Transboundary and emerging diseases.

    Niskanen E.A., Ihalainen T.O., Kalliolinna O., Häkkinen M.M., Vihinen-Ranta M. (2010). Effect of ATP binding and hydrolysis on dynamics of canine parvovirus NS1. Journal of virology. 84: 5391-5403.

    Niskanen E.A., Kalliolinna O., Ihalainen T.O., Häkkinen M., Vihinen-Ranta M. (2013). Mutations in DNA binding and transactivation domains affect the dynamics of parvovirus NS1 protein. Journal of virology. 87: 11762-11774.

    Ohshima T., Hisaka M., Kawakami K., Kishi M., Tohya Y. & Mochizuki M. (2008). Chronological analysis of canine parvovirus type 2 isolates in Japan. Journal of Veterinary Medical Science. 70(8): 769-775.

    Parrish C.R., Aquadro C.F., Strassheim M., Evermann J., Sgro J. & Mohammed H. (1991). Rapid antigenic-type replacement and DNA sequence evolution of canine parvovirus. Journal of Virology. 65(12): 6544-6552.

    Reed A.P., Jones E.V. & Miller T.J. (1988). Nucleotide sequence and genome organization of canine parvovirus. Journal of virology. 62(1): 266-276.

    Simpson A.A., Chandrasekar V., Hebert B., Sullivan G.M., Rossmann M.G. & Parrish C.R. (2000). Host range and variability of calcium binding by surface loops in the capsids of canine and feline par-voviruses. Journal of Molecular Biology. 300(3): 597-610.

    Truyen U. & Parrish C.R. (1992). Canine and feline host ranges of ca-nine parvovirus and feline panleukopenia virus: Distinct host cell tropisms of each virus in vitroand in vivo. Journal of Virology. 66(9): 5399-5408.

    Vickers N.J. (2017). Animal communication: when i’m calling you, will you answer too? Current Biology. 27(14): R713-R715.

    Wang D., Yuan W., Davis I. & Parrish C.R. (1998). Nonstructural protein-2 and the replication of canine parvovirus. Virology. 240: 273-281.

    Wang J., Lin P., Zhao H., Cheng Y., Jiang Z., Zhu H., Wu H. &Cheng S. (2016). Continuing evolution of canine parvovirus in China: isolation of novel variants with an Ala5Gly mutation in the VP2 protein. Infection, Genetics and Evolution. 38: 73-78.

    Zhao H., Wang J., Jiang Y., Cheng Y., Lin P., Zhu H., Han G.,Yi. L.,Zhang S., Guo L. & Cheng S. (2017). Typing of canine parvovirus strains circulating in North‐East China. Transboundary and emerging diseases. 64(2): 495-503.