Structural Analysis and Data Mining of the Expression Profiles of Genes encoding TCP Transcription Factors in Pummelo (Citrus grandis)

Received: 10-03-2020

Accepted: 04-05-2020

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Issue: Vol. 18 No. 4 (2020)

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KỸ THUẬT VÀ CÔNG NGHỆ

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Hà C., Huòng N., Huong, B., Hòng L., Quỳnh L., Thu, P., & Lọc N. (2024). Structural Analysis and Data Mining of the Expression Profiles of Genes encoding TCP Transcription Factors in Pummelo (Citrus grandis). Vietnam Journal of Agricultural Sciences, 18(4), 289–296. http://testtapchi.vnua.edu.vn/index.php/vjasvn/article/view/660

Structural Analysis and Data Mining of the Expression Profiles of Genes encoding TCP Transcription Factors in Pummelo (Citrus grandis)

Chu Dúc Hà (*) 1 , Nguyẽn Thu Huòng 1, 2 , Bùi Thị Thu Huong 2 , La Viẹt Hòng 3 , Le Thị Ngọc Quỳnh 4 , Phạm Phuong Thu 3 , Nguyẽn Van Lọc 5

  • 1 Viện Di truyền Nông nghiệp, Viện Khoa học Nông nghiệp Việt Nam
  • 2 Khoa Công nghệ sinh học, Học viện Nông nghiệp Việt Nam
  • 3 Khoa Sinh - Kỹ thuật Nông nghiệp, Đại học Sư phạm Hà Nội 2
  • 4 Khoa Hóa và Môi trường, Đại học Thủy lợi
  • 5 Khoa Nông học, Học viện Nông nghiệp Việt Nam

    • Keywords

    Citrus grandis, transcription factor, TCP, structure, expression profile

    Abstract


    TCP transcription factor is considered as the key regulatory proteins, which are demonstrated to involve in the growth and development of plants. However, the information of TCP in pummelo (Citrus grandis) has been still lacking.The aims of this study were to identify and characterize the basic features of TCPs in pummelo. As the results,a total of 21 genes encoding TCP havebeen identified in the pummelo's genome. Based on various bioinformatics tools, the physic-chemical properties of TCP family in pummelo have beenfound to be very variable, hydrophilic, as confirmed in other plants-species. The majority of CgTCP genes consist ofonly one exon. We have also found that TCP in pummelo could classify into 3 plant-specific groups, including PCF1, CIN and CYC/TB1. Of our interest, according to the transcriptome atlas of the sweet orange (C. sinensis), we demonstrated that the homologous gene of CgTCP02 is strongly induced in leaf, flower and fruit. Taken together, our results could get insight into the TCP family in pummeloand initially evaluate the expression profiles of TCP-coding genes in the major organs, and thus, provide the candidate genes for further functional characterizations.

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