Characterizing Glycoprotein-gene Encoding Sequences of Avian MetapneumovirusFound in Poultry in Northern Vietnam

Received: 05-03-2021

Accepted: 09-04-2021

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CHĂN NUÔI – THÚ Y – THỦY SẢN

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Giap, N., Phuong, C., Le, H., Anh, D., Huong, C., Ngoc, V., … Luyen, L. (2024). Characterizing Glycoprotein-gene Encoding Sequences of Avian MetapneumovirusFound in Poultry in Northern Vietnam. Vietnam Journal of Agricultural Sciences, 19(5), 596–604. http://testtapchi.vnua.edu.vn/index.php/vjasvn/article/view/820

Characterizing Glycoprotein-gene Encoding Sequences of Avian MetapneumovirusFound in Poultry in Northern Vietnam

Nguyen Van Giap (*) 1 , Cao Thi Bich Phuong 1 , Huynh Thi My Le 1 , Dang Huu Anh 1 , Chu Thi Thanh Huong 1 , Vu Thi Ngoc 1 , Vo Van Hieu 1 , Ta Thi Kim Chung 1 , Le Ba Hiep 2 , Le Thi Trinh 2 , Truong Quang Lam 1 , Nguyen Thi Hoa 1 , Le Thi Luyen 1

  • 1 Khoa Thú y, Học viện Nông nghiệp Việt Nam
  • 2 Công ty Cổ phần Thú y xanh (Greenvet)
  • Keywords

    Avian Metapneumovirus, attachment glycoprotein gene, molecular characterization

    Abstract


    Avian Metapneumovirus (aMPV) is one of the causative agents of respiratory disease complex in turkeys and chickens, which has been recently detected in Vietnam. Due to its novelty, a few published papers are available on preliminary results, describing the clinical disease, sero- and viral-positivity rates. This study aimed at providing more details about the molecular characterizations of the circulating virus by sequenced and then applied bioinformatics for data mining. Based on the sequence of partial attachment glycoprotein coding gene, 5/5 aMPV strains were classified as subgroup B. Though 5/5 strains belonged to the vaccine-derived lineage, all of them had differences at the nucleotide and amino acid levels compared to the attenuated strain of Nemovac vaccine available in Vietnam.

    References

    Afonso C.L., Amarasinghe G.K., Banyai K., Bao Y., Basler C.F., Bavari S., Bejerman N., Blasdell K.R., Briand F.X., Briese T., Bukreyev A., Calisher C.H., Chandran K., Cheng J., Clawson A.N., Collins P.L., Dietzgen R.G., Dolnik O., Domier L.L., Durrwald R., Dye J.M., Easton A.J., Ebihara H., Farkas S.L., Freitas-Astua J., Formenty P., Fouchier R.A., Fu Y., Ghedin E., Goodin M.M., Hewson R., Horie M., Hyndman T.H., Jiang D., Kitajima E.W., Kobinger G.P., Kondo H., Kurath G., Lamb R.A., Lenardon S., Leroy E.M., Li C.X., Lin X.D., Liu L., Longdon B., Marton S., Maisner A., Muhlberger E., Netesov S.V., Nowotny N., Patterson J.L., Payne S.L., Paweska J.T., Randall R.E., Rima B.K., Rota P., Rubbenstroth D., Schwemmle M., Shi M., Smither S.J., Stenglein M.D., Stone D.M., Takada A., Terregino C., Tesh R.B., Tian J.H., Tomonaga K., Tordo N., Towner J. S., Vasilakis N., Verbeek M., Volchkov V.E., Wahl-Jensen V., Walsh J.A., Walker P. J., Wang D., Wang L.F., Wetzel T., Whitfield A.E., Xie J.T., Yuen K.Y., Zhang Y.Z. & Kuhn J.H. (2016). Taxonomy of the order Mononegavirales: update 2016. Arch Virol. 161(8): 2351-60.

    Aung Y.H., Liman M., Neumann U. & Rautenschlein S. (2008). Reproducibility of swollen sinuses in broilers by experimental infection with Avian Metapneumovirussubtypes A and B of turkey origin and their comparative pathogenesis. Avian Pathol.37(1):65-74.

    Bayraktar E., Umar S., Yilmaz A., Turan N., Franzo G., Tucciarone C.M., Cecchinato M., Cakan B., Iqbal M. & Yilmaz H. (2018). First Molecular Characterization of Avian Metapneumovirus(aMPV) in Turkish Broiler Flocks. Avian Dis.62(4): 425-430.

    Bayon-Auboyer M.H., Arnauld C., Toquin D. & Eterradossi N. (2000). Nucleotide sequences of the F, L and G protein genes of two non-A/non-B Avian Pneumoviruses(APV) reveal a novel APV subgroup. J Gen Virol.81(Pt 11): 2723-33.

    Bayon-Auboyer M.H., Jestin V., Toquin D., Cherbonnel M. & Eterradossi N. (1999). Comparison of F-, G- and N-based RT-PCR protocols with conventional virological procedures for the detection and typing of turkey rhinotracheitis virus. Arch Virol. 144(6):1091-109.

    Brown P.A., Allee C., Courtillon C., Szerman N., Lemaitre E., Toquin D., Mangart J.M., Amelot M. & Eterradossi N. (2019). Host specificity of Avian metapneumoviruses. Avian Pathol.48(4):311-318.

    Brown P.A., Lemaitre E., Briand F.X., Courtillon C., Guionie O., Allee C., Toquin D., Bayon-Auboyer M.H., Jestin V. & Eterradossi N. (2014). Molecular comparisons of full length metapneumovirus (MPV) genomes, including newly determined French AMPV-C and -D isolates, further supports possible subclassification within the MPV Genus. PLoS One. 9(7): e102740.

    Cao Thị Bích Phượng, Lê Bá Hiệp, Huỳnh Thị Mỹ Lệ & Nguyễn Văn Giáp (2020). Nghiên cứu sự lưu hành của Avian Metapneumovirus(aMPV) ở gà nuôi tại một số tỉnh miền Bắc Việt Nam. Tạp chí Khoa học Nông nghiệp Việt Nam. 18(7): 520-528.

    Catelli E., Cecchinato M., Savage C.E., Jones R.C. & Naylor C.J. (2006). Demonstration of loss of attenuation and extended field persistence of alive Avian Metapneumovirusvaccine. Vaccine. 24(42-43): 6476-82.

    Catelli E., Lupini C., Cecchinato M., Ricchizzi E., Brown P. & Naylor C.J. (2010). Field Avian Metapneumovirusevolution avoiding vaccine induced immunity. Vaccine. 28(4): 916-21.

    Cecchinato M., Catelli E., Lupini C., Ricchizzi E., Clubbe J., Battilani M. & Naylor C.J. (2010). Avian Metapneumovirus(AMPV) attachment protein involvement in probable virus evolution concurrent with mass live vaccine introduction. Vet Microbiol.146(1-2):24-34.

    Cecchinato M., Lupini C., Ricchizzi E., Falchieri M., Meini A., Jones R.C. & Catelli E. (2012). Italian field survey reveals a high diffusion of Avian Metapneumovirussubtype B in layers and weaknesses in the vaccination strategy applied, Avian Dis,56(4):720-4.

    Chacon J.L., Mizuma M., Vejarano M.P., Toquin D., Eterradossi N., Patnayak D.P., Goyal S.M. & Ferreira A.J. (2011). Avian Metapneumovirussubtypes circulating in Brazilian vaccinated and nonvaccinated chicken and turkey farms. Avian Dis.55(1): 82-9.

    Cook J.K., Chesher J., Orthel F., Woods M.A., Orbell S.J., Baxendale W. & Huggins M.B. (2000). Avian Pneumovirusinfection of laying hens: experimental studies. Avian Pathol. 29(6): 545-56.

    Drummond A.J., Suchard M.A., Xie D. & Rambaut A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol.29(8):1969-73.

    Fulton R.M. (2014). Respiratory Disease. In:Backyard Poultry Medicine and Surgery.pp. 137-144.

    Gharaibeh S.M. & Algharaibeh G.R. (2007). Serological and molecular detection of avian pneumovirusin chickens with respiratory disease in Jordan. Poult Sci. 86(8): 1677-81.

    Hall T. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41: 95-98.

    Jardine C.M., Parmley E.J., Buchanan T., Nituch L. & Ojkic D. (2018). Avian Metapneumovirussubtype C in Wild Waterfowl in Ontario, Canada. Transbound Emerg Dis. 65(4): 1098-1102.

    Juhasz K. & Easton A.J. (1994). Extensive sequence variation in the attachment (G) protein gene of Avian Pneumovirus: evidence for two distinct subgroups. J Gen Virol.75(Pt 11):2873-80.

    Kleven S.H. (1998). Mycoplasmas in the etiology of multifactorial respiratory disease. Poult Sci.77(8):1146-9.

    Lwamba H.C., Alvarez R., Wise M.G., Yu Q., Halvorson D., Njenga M.K. & Seal B.S. (2005). Comparison of the full-length genome sequence of Avian Metapneumovirussubtype C with other paramyxoviruses.Virus Res.107(1):83-92.

    Lwamba H.C., Bennett R.S., Lauer D.C., Halvorson D.A. & Njenga M.K. (2002). Characterization of Avian Metapneumovirusesisolated in the USA. Anim Health Res Rev. 3(2): 107-17.

    Lim A.a.S., Abu J., Choo P.Y., Seetha J. & Goh Y.M. (2009). Detection of Avian Metapneumovirus(aMPV) field infection via reverse transcriptase polymerase chain reaction (RT-PCR) and ELISA in two layer farms in Johor. J. Vet. Malaysia. 21(1):9-13.

    Lupini C., Cecchinato M., Ricchizzi E., Naylor C.J. & Catelli E. (2011). A turkey rhinotracheitis outbreak caused by the environmental spread of a vaccine-derived Avian Metapneumovirus. Avian Pathol. 40(5): 525-30.

    Mase M., Yamaguchi S., Tsukamoto K., Imada T., Imai K. & Nakamura K. (2003). Presence of avian pneumovirus subtypes A and B in Japan. Avian Dis.47(2):481-4.

    Mescolini G., Lupini C., Franzo G., Quaglia, G., Legnardi M., Cecchinato M., Tucciarone C.M., Blanco A., Turblin V., Biarnes M., Tatone F., Falchieri M. & Catelli E. (2020). What is new on molecular characteristics of Avian metapneumovirusstrains circulating in Europe? Transbound Emerg Dis.

    Motamed Chaboki P., Ghalyanchilangeroudi A., Karimi V., Abdollahi H., Maghsoudloo H., Hosseini H., Khaltababdi Farahahni R., Ghafouri S.A., Falah M.H. & Rezaee H. (2018). Prevalence of Avian Metapneumovirussubtype B in live bird market iný Gilan province, Iran. Veterinary Research Forum. 9(1): 93-97.

    Naylor C., Shaw K., Britton P. & Cavanagh D. (1997). Appearance of type B Avian Pneumovirusin great Britain. Avian Pathol.26(2):327-38.

    Owoade A.A., Ducatez M.F., Hubschen J.M., Sausy A., Chen H., Guan Y. & Muller C.P. (2008). Avian Metapneumovirussubtype A in China and subtypes A and B in Nigeria. Avian Dis. 52(3): 502-6.

    Pommie C., Levadoux S., Sabatier R., Lefranc G. & Lefranc M.P. (2004). IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties. J Mol Recognit. 17(1): 17-32.

    Seal B.S. (1998). Matrix protein gene nucleotide and predicted amino acid sequence demonstrate that the first US Avian Pneumovirusisolate is distinct from European strains. Virus Res.58(1-2):45-52.

    Sugiyama M., Koimaru H., Shiba M., Ono E., Nagata T. & Ito T. (2006). Drop of egg production in chickens by experimental infection with an Avian Metapneumovirusstrain PLE8T1 derived from swollen head syndrome and the application to evaluate vaccine, J Vet Med Sci.68(8):783-7.

    Sun S., Chen F., Cao S., Liu J., Lei W, Li G., Song Y., Lu J., Liu C., Qin J. & Li H. (2014). Isolation and characterization of a subtype C Avian Metapneumoviruscirculating in Muscovy ducks in China. Vet Res. 45(1):74.